Serveur d'exploration sur le Covid à Stanford

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Multi-classifier-based identification of COVID-19 from chest computed tomography using generalizable and interpretable radiomics features.

Identifieur interne : 000058 ( Main/Exploration ); précédent : 000057; suivant : 000059

Multi-classifier-based identification of COVID-19 from chest computed tomography using generalizable and interpretable radiomics features.

Auteurs : Lu Wang [République populaire de Chine] ; Brendan Kelly [États-Unis] ; Edward H. Lee [États-Unis] ; Hongmei Wang [République populaire de Chine] ; Jimmy Zheng [États-Unis] ; Wei Zhang [République populaire de Chine] ; Safwan Halabi [États-Unis] ; Jining Liu [République populaire de Chine] ; Yulong Tian [République populaire de Chine] ; Baoqin Han [République populaire de Chine] ; Chuanbin Huang [République populaire de Chine] ; Kristen W. Yeom [États-Unis] ; Kexue Deng [République populaire de Chine] ; Jiangdian Song [États-Unis]

Source :

RBID : pubmed:33497881

Abstract

PURPOSE

To investigate the efficacy of radiomics in diagnosing patients with coronavirus disease (COVID-19) and other types of viral pneumonia with clinical symptoms and CT signs similar to those of COVID-19.

METHODS

Between 18 January 2020 and 20 May 2020, 110 SARS-CoV-2 positive and 108 SARS-CoV-2 negative patients were retrospectively recruited from three hospitals based on the inclusion criteria. Manual segmentation of pneumonia lesions on CT scans was performed by four radiologists. The latest version of Pyradiomics was used for feature extraction. Four classifiers (linear classifier, k-nearest neighbour, least absolute shrinkage and selection operator [LASSO], and random forest) were used to differentiate SARS-CoV-2 positive and SARS-CoV-2 negative patients. Comparison of the performance of the classifiers and radiologists was evaluated by ROC curve and Kappa score.

RESULTS

We manually segmented 16,053 CT slices, comprising 32,625 pneumonia lesions, from the CT scans of all patients. Using Pyradiomics, 120 radiomic features were extracted from each image. The key radiomic features screened by different classifiers varied and lead to significant differences in classification accuracy. The LASSO achieved the best performance (sensitivity: 72.2%, specificity: 75.1%, and AUC: 0.81) on the external validation dataset and attained excellent agreement (Kappa score: 0.89) with radiologists (average sensitivity: 75.6%, specificity: 78.2%, and AUC: 0.81). All classifiers indicated that "Original_Firstorder_RootMeanSquared" and "Original_Firstorder_Uniformity" were significant features for this task.

CONCLUSIONS

We identified radiomic features that were significantly associated with the classification of COVID-19 pneumonia using multiple classifiers. The quantifiable interpretation of the differences in features between the two groups extends our understanding of CT imaging characteristics of COVID-19 pneumonia.


DOI: 10.1016/j.ejrad.2021.109552
PubMed: 33497881
PubMed Central: PMC7810032


Affiliations:


Links toward previous steps (curation, corpus...)


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<name sortKey="Zhang, Wei" sort="Zhang, Wei" uniqKey="Zhang W" first="Wei" last="Zhang">Wei Zhang</name>
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<nlm:affiliation>Department of Radiology, the Lu'an Affiliated Hospital, Anhui Medical University, No. 21 Wanxi Rd, Lu'an, Anhui, 237005, China.</nlm:affiliation>
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<name sortKey="Halabi, Safwan" sort="Halabi, Safwan" uniqKey="Halabi S" first="Safwan" last="Halabi">Safwan Halabi</name>
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<name sortKey="Liu, Jining" sort="Liu, Jining" uniqKey="Liu J" first="Jining" last="Liu">Jining Liu</name>
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<nlm:affiliation>Bengbu Medical College, Department of Imaging Medicine, 2600 Donghai Avenue, Bengbu, Anhui, 233030, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
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<name sortKey="Tian, Yulong" sort="Tian, Yulong" uniqKey="Tian Y" first="Yulong" last="Tian">Yulong Tian</name>
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<nlm:affiliation>Wannan Medical College, Department of Imaging Medicine and Nuclear Medicine, 22 Wenchang West Rd, Higher Education Park, Wuhu, Anhui, 241002, China.</nlm:affiliation>
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<name sortKey="Han, Baoqin" sort="Han, Baoqin" uniqKey="Han B" first="Baoqin" last="Han">Baoqin Han</name>
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<name sortKey="Huang, Chuanbin" sort="Huang, Chuanbin" uniqKey="Huang C" first="Chuanbin" last="Huang">Chuanbin Huang</name>
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<name sortKey="Yeom, Kristen W" sort="Yeom, Kristen W" uniqKey="Yeom K" first="Kristen W" last="Yeom">Kristen W. Yeom</name>
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<name sortKey="Deng, Kexue" sort="Deng, Kexue" uniqKey="Deng K" first="Kexue" last="Deng">Kexue Deng</name>
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<name sortKey="Song, Jiangdian" sort="Song, Jiangdian" uniqKey="Song J" first="Jiangdian" last="Song">Jiangdian Song</name>
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<title level="j">European journal of radiology</title>
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<b>PURPOSE</b>
</p>
<p>To investigate the efficacy of radiomics in diagnosing patients with coronavirus disease (COVID-19) and other types of viral pneumonia with clinical symptoms and CT signs similar to those of COVID-19.</p>
</div>
<div type="abstract" xml:lang="en">
<p>
<b>METHODS</b>
</p>
<p>Between 18 January 2020 and 20 May 2020, 110 SARS-CoV-2 positive and 108 SARS-CoV-2 negative patients were retrospectively recruited from three hospitals based on the inclusion criteria. Manual segmentation of pneumonia lesions on CT scans was performed by four radiologists. The latest version of Pyradiomics was used for feature extraction. Four classifiers (linear classifier, k-nearest neighbour, least absolute shrinkage and selection operator [LASSO], and random forest) were used to differentiate SARS-CoV-2 positive and SARS-CoV-2 negative patients. Comparison of the performance of the classifiers and radiologists was evaluated by ROC curve and Kappa score.</p>
</div>
<div type="abstract" xml:lang="en">
<p>
<b>RESULTS</b>
</p>
<p>We manually segmented 16,053 CT slices, comprising 32,625 pneumonia lesions, from the CT scans of all patients. Using Pyradiomics, 120 radiomic features were extracted from each image. The key radiomic features screened by different classifiers varied and lead to significant differences in classification accuracy. The LASSO achieved the best performance (sensitivity: 72.2%, specificity: 75.1%, and AUC: 0.81) on the external validation dataset and attained excellent agreement (Kappa score: 0.89) with radiologists (average sensitivity: 75.6%, specificity: 78.2%, and AUC: 0.81). All classifiers indicated that "Original_Firstorder_RootMeanSquared" and "Original_Firstorder_Uniformity" were significant features for this task.</p>
</div>
<div type="abstract" xml:lang="en">
<p>
<b>CONCLUSIONS</b>
</p>
<p>We identified radiomic features that were significantly associated with the classification of COVID-19 pneumonia using multiple classifiers. The quantifiable interpretation of the differences in features between the two groups extends our understanding of CT imaging characteristics of COVID-19 pneumonia.</p>
</div>
</front>
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<Title>European journal of radiology</Title>
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<Pagination>
<MedlinePgn>109552</MedlinePgn>
</Pagination>
<ELocationID EIdType="pii" ValidYN="Y">S0720-048X(21)00032-2</ELocationID>
<ELocationID EIdType="doi" ValidYN="Y">10.1016/j.ejrad.2021.109552</ELocationID>
<Abstract>
<AbstractText Label="PURPOSE" NlmCategory="OBJECTIVE">To investigate the efficacy of radiomics in diagnosing patients with coronavirus disease (COVID-19) and other types of viral pneumonia with clinical symptoms and CT signs similar to those of COVID-19.</AbstractText>
<AbstractText Label="METHODS" NlmCategory="METHODS">Between 18 January 2020 and 20 May 2020, 110 SARS-CoV-2 positive and 108 SARS-CoV-2 negative patients were retrospectively recruited from three hospitals based on the inclusion criteria. Manual segmentation of pneumonia lesions on CT scans was performed by four radiologists. The latest version of Pyradiomics was used for feature extraction. Four classifiers (linear classifier, k-nearest neighbour, least absolute shrinkage and selection operator [LASSO], and random forest) were used to differentiate SARS-CoV-2 positive and SARS-CoV-2 negative patients. Comparison of the performance of the classifiers and radiologists was evaluated by ROC curve and Kappa score.</AbstractText>
<AbstractText Label="RESULTS" NlmCategory="RESULTS">We manually segmented 16,053 CT slices, comprising 32,625 pneumonia lesions, from the CT scans of all patients. Using Pyradiomics, 120 radiomic features were extracted from each image. The key radiomic features screened by different classifiers varied and lead to significant differences in classification accuracy. The LASSO achieved the best performance (sensitivity: 72.2%, specificity: 75.1%, and AUC: 0.81) on the external validation dataset and attained excellent agreement (Kappa score: 0.89) with radiologists (average sensitivity: 75.6%, specificity: 78.2%, and AUC: 0.81). All classifiers indicated that "Original_Firstorder_RootMeanSquared" and "Original_Firstorder_Uniformity" were significant features for this task.</AbstractText>
<AbstractText Label="CONCLUSIONS" NlmCategory="CONCLUSIONS">We identified radiomic features that were significantly associated with the classification of COVID-19 pneumonia using multiple classifiers. The quantifiable interpretation of the differences in features between the two groups extends our understanding of CT imaging characteristics of COVID-19 pneumonia.</AbstractText>
<CopyrightInformation>Copyright © 2021 The Author(s). Published by Elsevier B.V. All rights reserved.</CopyrightInformation>
</Abstract>
<AuthorList CompleteYN="Y">
<Author ValidYN="Y">
<LastName>Wang</LastName>
<ForeName>Lu</ForeName>
<Initials>L</Initials>
<AffiliationInfo>
<Affiliation>School of Medical Informatics, China Medical University Puhe Rd, Shenbei New District, Shenyang, Liaoning, 110122, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Kelly</LastName>
<ForeName>Brendan</ForeName>
<Initials>B</Initials>
<AffiliationInfo>
<Affiliation>Department of Radiology, School of Medicine, Stanford University 725 Welch Rd MC 5654, Palo Alto, CA, 94305, United States.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Lee</LastName>
<ForeName>Edward H</ForeName>
<Initials>EH</Initials>
<AffiliationInfo>
<Affiliation>Department of Radiology, School of Medicine, Stanford University 725 Welch Rd MC 5654, Palo Alto, CA, 94305, United States.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Wang</LastName>
<ForeName>Hongmei</ForeName>
<Initials>H</Initials>
<AffiliationInfo>
<Affiliation>Department of Radiology, The First Affiliated Hospital of University of Science and Technology of China, No. 1 Swan Lake Road Hefei, Anhui, 230036, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Zheng</LastName>
<ForeName>Jimmy</ForeName>
<Initials>J</Initials>
<AffiliationInfo>
<Affiliation>Department of Radiology, School of Medicine, Stanford University 725 Welch Rd MC 5654, Palo Alto, CA, 94305, United States.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Zhang</LastName>
<ForeName>Wei</ForeName>
<Initials>W</Initials>
<AffiliationInfo>
<Affiliation>Department of Radiology, the Lu'an Affiliated Hospital, Anhui Medical University, No. 21 Wanxi Rd, Lu'an, Anhui, 237005, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Halabi</LastName>
<ForeName>Safwan</ForeName>
<Initials>S</Initials>
<AffiliationInfo>
<Affiliation>Department of Radiology, School of Medicine, Stanford University 725 Welch Rd MC 5654, Palo Alto, CA, 94305, United States.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Liu</LastName>
<ForeName>Jining</ForeName>
<Initials>J</Initials>
<AffiliationInfo>
<Affiliation>Bengbu Medical College, Department of Imaging Medicine, 2600 Donghai Avenue, Bengbu, Anhui, 233030, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Tian</LastName>
<ForeName>Yulong</ForeName>
<Initials>Y</Initials>
<AffiliationInfo>
<Affiliation>Wannan Medical College, Department of Imaging Medicine and Nuclear Medicine, 22 Wenchang West Rd, Higher Education Park, Wuhu, Anhui, 241002, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Han</LastName>
<ForeName>Baoqin</ForeName>
<Initials>B</Initials>
<AffiliationInfo>
<Affiliation>Wannan Medical College, Department of Imaging Medicine and Nuclear Medicine, 22 Wenchang West Rd, Higher Education Park, Wuhu, Anhui, 241002, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Huang</LastName>
<ForeName>Chuanbin</ForeName>
<Initials>C</Initials>
<AffiliationInfo>
<Affiliation>Wannan Medical College, Department of Imaging Medicine and Nuclear Medicine, 22 Wenchang West Rd, Higher Education Park, Wuhu, Anhui, 241002, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Yeom</LastName>
<ForeName>Kristen W</ForeName>
<Initials>KW</Initials>
<AffiliationInfo>
<Affiliation>Department of Radiology, School of Medicine, Stanford University 725 Welch Rd MC 5654, Palo Alto, CA, 94305, United States.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Deng</LastName>
<ForeName>Kexue</ForeName>
<Initials>K</Initials>
<AffiliationInfo>
<Affiliation>Department of Radiology, The First Affiliated Hospital of University of Science and Technology of China, No. 1 Swan Lake Road Hefei, Anhui, 230036, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Song</LastName>
<ForeName>Jiangdian</ForeName>
<Initials>J</Initials>
<AffiliationInfo>
<Affiliation>School of Medical Informatics, China Medical University Puhe Rd, Shenbei New District, Shenyang, Liaoning, 110122, China; Department of Radiology, School of Medicine, Stanford University 1201 Welch Rd, Lucas Center, Palo Alto, CA, 94305, United States. Electronic address: song.jd0910@gmail.com.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList>
<PublicationType UI="D016428">Journal Article</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic">
<Year>2021</Year>
<Month>01</Month>
<Day>15</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo>
<Country>Ireland</Country>
<MedlineTA>Eur J Radiol</MedlineTA>
<NlmUniqueID>8106411</NlmUniqueID>
<ISSNLinking>0720-048X</ISSNLinking>
</MedlineJournalInfo>
<CitationSubset>IM</CitationSubset>
<KeywordList Owner="NOTNLM">
<Keyword MajorTopicYN="N">Coronavirus infections</Keyword>
<Keyword MajorTopicYN="N">Machine learning</Keyword>
<Keyword MajorTopicYN="N">Pneumonia</Keyword>
<Keyword MajorTopicYN="N">Radiology</Keyword>
<Keyword MajorTopicYN="N">Tomography, X-Ray computed</Keyword>
</KeywordList>
</MedlineCitation>
<PubmedData>
<History>
<PubMedPubDate PubStatus="received">
<Year>2020</Year>
<Month>09</Month>
<Day>04</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="revised">
<Year>2020</Year>
<Month>12</Month>
<Day>09</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="accepted">
<Year>2021</Year>
<Month>01</Month>
<Day>12</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed">
<Year>2021</Year>
<Month>1</Month>
<Day>27</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline">
<Year>2021</Year>
<Month>1</Month>
<Day>27</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez">
<Year>2021</Year>
<Month>1</Month>
<Day>26</Day>
<Hour>20</Hour>
<Minute>11</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>aheadofprint</PublicationStatus>
<ArticleIdList>
<ArticleId IdType="pubmed">33497881</ArticleId>
<ArticleId IdType="pii">S0720-048X(21)00032-2</ArticleId>
<ArticleId IdType="doi">10.1016/j.ejrad.2021.109552</ArticleId>
<ArticleId IdType="pmc">PMC7810032</ArticleId>
</ArticleIdList>
</PubmedData>
</pubmed>
<affiliations>
<list>
<country>
<li>République populaire de Chine</li>
<li>États-Unis</li>
</country>
</list>
<tree>
<country name="République populaire de Chine">
<noRegion>
<name sortKey="Wang, Lu" sort="Wang, Lu" uniqKey="Wang L" first="Lu" last="Wang">Lu Wang</name>
</noRegion>
<name sortKey="Deng, Kexue" sort="Deng, Kexue" uniqKey="Deng K" first="Kexue" last="Deng">Kexue Deng</name>
<name sortKey="Han, Baoqin" sort="Han, Baoqin" uniqKey="Han B" first="Baoqin" last="Han">Baoqin Han</name>
<name sortKey="Huang, Chuanbin" sort="Huang, Chuanbin" uniqKey="Huang C" first="Chuanbin" last="Huang">Chuanbin Huang</name>
<name sortKey="Liu, Jining" sort="Liu, Jining" uniqKey="Liu J" first="Jining" last="Liu">Jining Liu</name>
<name sortKey="Tian, Yulong" sort="Tian, Yulong" uniqKey="Tian Y" first="Yulong" last="Tian">Yulong Tian</name>
<name sortKey="Wang, Hongmei" sort="Wang, Hongmei" uniqKey="Wang H" first="Hongmei" last="Wang">Hongmei Wang</name>
<name sortKey="Zhang, Wei" sort="Zhang, Wei" uniqKey="Zhang W" first="Wei" last="Zhang">Wei Zhang</name>
</country>
<country name="États-Unis">
<noRegion>
<name sortKey="Kelly, Brendan" sort="Kelly, Brendan" uniqKey="Kelly B" first="Brendan" last="Kelly">Brendan Kelly</name>
</noRegion>
<name sortKey="Halabi, Safwan" sort="Halabi, Safwan" uniqKey="Halabi S" first="Safwan" last="Halabi">Safwan Halabi</name>
<name sortKey="Lee, Edward H" sort="Lee, Edward H" uniqKey="Lee E" first="Edward H" last="Lee">Edward H. Lee</name>
<name sortKey="Song, Jiangdian" sort="Song, Jiangdian" uniqKey="Song J" first="Jiangdian" last="Song">Jiangdian Song</name>
<name sortKey="Yeom, Kristen W" sort="Yeom, Kristen W" uniqKey="Yeom K" first="Kristen W" last="Yeom">Kristen W. Yeom</name>
<name sortKey="Zheng, Jimmy" sort="Zheng, Jimmy" uniqKey="Zheng J" first="Jimmy" last="Zheng">Jimmy Zheng</name>
</country>
</tree>
</affiliations>
</record>

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